HL_6MTE_024

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6MTE|1|5|C|1768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_024 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.3795

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6MTE|1|5|C|1763
6MTE|1|5|G|1764
6MTE|1|5|A|1765
6MTE|1|5|A|1766
6MTE|1|5|A|1767
6MTE|1|5|C|1768
6MTE|1|5|G|1769

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain PP

uS19