HL_6MTE_050

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

G(A2M)AGAAA(PSU)UC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_050 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3445

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6MTE|1|5|G|3722
6MTE|1|5|A2M|3723
6MTE|1|5|A|3724
6MTE|1|5|G|3725
6MTE|1|5|A|3726
6MTE|1|5|A|3727
6MTE|1|5|A|3728
6MTE|1|5|PSU|3729
6MTE|1|5|U|3730
6MTE|1|5|C|3731

Current chains

Chain 5

28S rRNA

Nearby chains

Chain i

eL36

Chain o

eL42