HL_6MTE_053

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAACG(P7G)GC

Length

10 nucleotides

Bulged bases

6MTE|1|5|A|3876, 6MTE|1|5|A|3877, 6MTE|1|5|C|3878, 6MTE|1|5|G|3881

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_053 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0929

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6MTE|1|5|G|3873
6MTE|1|5|G|3874
6MTE|1|5|G|3875
6MTE|1|5|A|3876
6MTE|1|5|A|3877
6MTE|1|5|C|3878
6MTE|1|5|G|3879
6MTE|1|5|P7G|3880
6MTE|1|5|G|3881
6MTE|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain e

eL32