HL_6MTE_055

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

C(I4U)G(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6MTE|1|5|G|4195

QA status

Modified nucleotides: I4U, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0906

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6MTE|1|5|C|4193
6MTE|1|5|I4U|4194
6MTE|1|5|G|4195
6MTE|1|5|OMG|4196
6MTE|1|5|G|4197
6MTE|1|5|G|4198
6MTE|1|5|C|4199
6MTE|1|5|G|4200
6MTE|1|5|G|4201

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain b

eL29