3D structure

PDB id
6MTE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UUG(PSU)UCA
Length
7 nucleotides
Bulged bases
6MTE|1|5|G|4499
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6MTE_064 not in the Motif Atlas
Geometric match to HL_5TBW_063
Geometric discrepancy: 0.3117
The information below is about HL_5TBW_063
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_36430.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

6MTE|1|5|U|4497
6MTE|1|5|U|4498
6MTE|1|5|G|4499
6MTE|1|5|PSU|4500
6MTE|1|5|U|4501
6MTE|1|5|C|4502
6MTE|1|5|A|4503

Current chains

Chain 5
28S rRNA

Nearby chains

Chain B
uL3

Coloring options:


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