HL_6MTE_066

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_066 not in the Motif Atlas

Geometric match to HL_7RQB_064

Geometric discrepancy: 0.1066

The information below is about HL_7RQB_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6MTE|1|5|C|4603
6MTE|1|5|G|4604
6MTE|1|5|A|4605
6MTE|1|5|G|4606
6MTE|1|5|A|4607
6MTE|1|5|G|4608

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain m

eL40

Chain v

eEF2