HL_6N8K_027
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 6N8K|1|1|A|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8K_027 not in the Motif Atlas
- Geometric match to HL_1P6V_001
- Geometric discrepancy: 0.3635
- The information below is about HL_1P6V_001
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_53890.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6N8K|1|1|C|1239
6N8K|1|1|A|1240
6N8K|1|1|U|1241
6N8K|1|1|G|1242
6N8K|1|1|G|1243
6N8K|1|1|A|1244
6N8K|1|1|A|1245
6N8K|1|1|G|1246
6N8K|1|1|U|1247
6N8K|1|1|C|1248
6N8K|1|1|G|1249
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain b
- Nucleolar GTP-binding protein 1
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