HL_6N8K_054

3D structure

PDB id

6N8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAUUCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8K_054 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2121

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6N8K|1|1|C|2567
6N8K|1|1|C|2568
6N8K|1|1|A|2569
6N8K|1|1|U|2570
6N8K|1|1|U|2571
6N8K|1|1|C|2572
6N8K|1|1|G|2573
6N8K|1|1|G|2574

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain Z

60S ribosomal protein L27-A