HL_6N8K_072

3D structure

PDB id

6N8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUUGUUG

Length

8 nucleotides

Bulged bases

6N8K|1|1|U|3351, 6N8K|1|1|U|3354, 6N8K|1|1|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8K_072 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2588

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6N8K|1|1|C|3349
6N8K|1|1|C|3350
6N8K|1|1|U|3351
6N8K|1|1|U|3352
6N8K|1|1|G|3353
6N8K|1|1|U|3354
6N8K|1|1|U|3355
6N8K|1|1|G|3356

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains