HL_6N8K_086
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCUGAACGCCUCUAAGU
- Length
- 17 nucleotides
- Bulged bases
- 6N8K|1|1|G|3116, 6N8K|1|1|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8K_086 not in the Motif Atlas
- Geometric match to HL_7A0S_074
- Geometric discrepancy: 0.1881
- The information below is about HL_7A0S_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28904.1
- Basepair signature
- cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6N8K|1|1|G|3109
6N8K|1|1|C|3110
6N8K|1|1|U|3111
6N8K|1|1|G|3112
6N8K|1|1|A|3113
6N8K|1|1|A|3114
6N8K|1|1|C|3115
6N8K|1|1|G|3116
6N8K|1|1|C|3117
6N8K|1|1|C|3118
6N8K|1|1|U|3119
6N8K|1|1|C|3120
6N8K|1|1|U|3121
6N8K|1|1|A|3122
6N8K|1|1|A|3123
6N8K|1|1|G|3124
6N8K|1|1|U|3125
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain O
- 60S ribosomal protein L16-A
Coloring options: