3D structure

PDB id
6N8L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
AGUGAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6N8L_010 not in the Motif Atlas
Homologous match to HL_8C3A_010
Geometric discrepancy: 0.1277
The information below is about HL_8C3A_010
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6N8L|1|1|A|357
6N8L|1|1|G|358
6N8L|1|1|U|359
6N8L|1|1|G|360
6N8L|1|1|A|361
6N8L|1|1|U|362

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain b
Nucleolar GTP-binding protein 1
Chain j
60S ribosomal protein L37-A
Chain l
60S ribosomal protein L39

Coloring options:


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