HL_6N8L_081
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAGCAGUUG
- Length
- 9 nucleotides
- Bulged bases
- 6N8L|1|1|G|1507, 6N8L|1|1|U|1511
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8L_081 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3714
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05426.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6N8L|1|1|C|1505
6N8L|1|1|A|1506
6N8L|1|1|G|1507
6N8L|1|1|C|1508
6N8L|1|1|A|1509
6N8L|1|1|G|1510
6N8L|1|1|U|1511
6N8L|1|1|U|1512
6N8L|1|1|G|1513
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain P
- 60S ribosomal protein L17-A
- Chain R
- 60S ribosomal protein L19-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain l
- 60S ribosomal protein L39
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