HL_6N8L_088
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8L_088 not in the Motif Atlas
- Homologous match to HL_8P9A_183
- Geometric discrepancy: 0.1376
- The information below is about HL_8P9A_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01182.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6N8L|1|2|U|32
6N8L|1|2|U|33
6N8L|1|2|C|34
6N8L|1|2|C|35
6N8L|1|2|C|36
6N8L|1|2|G|37
6N8L|1|2|U|38
6N8L|1|2|C|39
6N8L|1|2|C|40
6N8L|1|2|G|41
6N8L|1|2|A|42
6N8L|1|2|U|43
6N8L|1|2|C|44
6N8L|1|2|A|45
Current chains
- Chain 2
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 60S ribosomal protein L5
- Chain J
- 60S ribosomal protein L11-A
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