HL_6N8M_027

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUGGAAGUCGG

Length

12 nucleotides

Bulged bases

6N8M|1|A|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8M|1|A|C|1239
6N8M|1|A|A|1240
6N8M|1|A|U|1241
6N8M|1|A|G|1242
6N8M|1|A|G|1243
6N8M|1|A|A|1244
6N8M|1|A|A|1245
6N8M|1|A|G|1246
6N8M|1|A|U|1247
6N8M|1|A|C|1248
6N8M|1|A|G|1249
6N8M|1|A|G|1250

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain L

Ribosomal protein L12

Chain Y

Tyrosine-protein phosphatase YVH1