HL_6N8M_044

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGGUACG

Length

8 nucleotides

Bulged bases

6N8M|1|A|G|1954, 6N8M|1|A|U|1955

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8M_044 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3866

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6N8M|1|A|C|1951
6N8M|1|A|G|1952
6N8M|1|A|G|1953
6N8M|1|A|G|1954
6N8M|1|A|U|1955
6N8M|1|A|A|2093
6N8M|1|A|C|2094
6N8M|1|A|G|2095

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain e

60S ribosomal protein L19-A