HL_6N8M_049

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUAACUAUGACUC

Length

15 nucleotides

Bulged bases

6N8M|1|A|C|2257, 6N8M|1|A|U|2258

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8M|1|A|G|2251
6N8M|1|A|A|2252
6N8M|1|A|G|2253
6N8M|1|A|U|2254
6N8M|1|A|A|2255
6N8M|1|A|A|2256
6N8M|1|A|C|2257
6N8M|1|A|U|2258
6N8M|1|A|A|2259
6N8M|1|A|U|2260
6N8M|1|A|G|2261
6N8M|1|A|A|2262
6N8M|1|A|C|2263
6N8M|1|A|U|2264
6N8M|1|A|C|2265

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain V

60S ribosomal export protein NMD3