HL_6N8M_080
3D structure
- PDB id
- 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAGAAAGUG
- Length
- 9 nucleotides
- Bulged bases
- 6N8M|1|A|G|2169
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8M_080 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.2694
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6N8M|1|A|C|2163
6N8M|1|A|A|2164
6N8M|1|A|G|2165
6N8M|1|A|A|2166
6N8M|1|A|A|2167
6N8M|1|A|A|2168
6N8M|1|A|G|2169
6N8M|1|A|U|2170
6N8M|1|A|G|2171
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain D
- 60S ribosomal protein L2-A
- Chain J
- 60S ribosomal protein L8-A
- Chain a
- 60S ribosomal protein L15-A
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