HL_6N8N_024
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUAAUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8N_024 not in the Motif Atlas
- Homologous match to HL_8P9A_136
- Geometric discrepancy: 0.2499
- The information below is about HL_8P9A_136
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_63894.1
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
6N8N|1|A|C|1076
6N8N|1|A|U|1077
6N8N|1|A|U|1078
6N8N|1|A|A|1079
6N8N|1|A|A|1080
6N8N|1|A|U|1081
6N8N|1|A|U|1082
6N8N|1|A|G|1083
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain G
- 60S ribosomal protein L5
- Chain g
- 60S ribosomal protein L21-A
- Chain o
- 60S ribosomal protein L29
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