HL_6N8N_027

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUGGAAGUCGG

Length

12 nucleotides

Bulged bases

6N8N|1|A|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8N_027 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.3446

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6N8N|1|A|C|1239
6N8N|1|A|A|1240
6N8N|1|A|U|1241
6N8N|1|A|G|1242
6N8N|1|A|G|1243
6N8N|1|A|A|1244
6N8N|1|A|A|1245
6N8N|1|A|G|1246
6N8N|1|A|U|1247
6N8N|1|A|C|1248
6N8N|1|A|G|1249
6N8N|1|A|G|1250

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain L

Ribosomal protein L12

Chain Y

Tyrosine-protein phosphatase YVH1