HL_6N8N_033
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAAGCUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8N_033 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2997
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N8N|1|A|G|1543
6N8N|1|A|G|1544
6N8N|1|A|A|1545
6N8N|1|A|A|1546
6N8N|1|A|G|1547
6N8N|1|A|C|1548
6N8N|1|A|U|1549
6N8N|1|A|C|1550
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain J
- 60S ribosomal protein L8-A
- Chain a
- 60S ribosomal protein L15-A
- Chain w
- 60S ribosomal protein L37-A
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