HL_6N8N_037

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

6N8N|1|A|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8N_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1502

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6N8N|1|A|G|1680
6N8N|1|A|U|1681
6N8N|1|A|U|1682
6N8N|1|A|A|1683
6N8N|1|A|U|1684
6N8N|1|A|C|1685
6N8N|1|A|U|1686
6N8N|1|A|U|1687
6N8N|1|A|U|1688

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain e

60S ribosomal protein L19-A

Chain h

60S ribosomal protein L22-A