HL_6N8N_048

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUAACUAUGACU

Length

13 nucleotides

Bulged bases

6N8N|1|A|A|2255, 6N8N|1|A|G|2261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8N|1|A|A|2252
6N8N|1|A|G|2253
6N8N|1|A|U|2254
6N8N|1|A|A|2255
6N8N|1|A|A|2256
6N8N|1|A|C|2257
6N8N|1|A|U|2258
6N8N|1|A|A|2259
6N8N|1|A|U|2260
6N8N|1|A|G|2261
6N8N|1|A|A|2262
6N8N|1|A|C|2263
6N8N|1|A|U|2264

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain V

60S ribosomal export protein NMD3

Chain W

Large subunit GTPase 1