HL_6N8N_065
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8N_065 not in the Motif Atlas
- Geometric match to HL_3OXE_002
- Geometric discrepancy: 0.1521
- The information below is about HL_3OXE_002
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_37569.3
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6N8N|1|A|C|3025
6N8N|1|A|G|3026
6N8N|1|A|A|3027
6N8N|1|A|G|3028
6N8N|1|A|A|3029
6N8N|1|A|G|3030
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain K
- 60S ribosomal protein L9-A
- Chain V
- 60S ribosomal export protein NMD3
- Chain Y
- Tyrosine-protein phosphatase YVH1
- Chain z
- Ubiquitin-60S ribosomal protein L40
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