HL_6N8N_067

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6N8N|1|A|G|3116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8N_067 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1222

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6N8N|1|A|C|3110
6N8N|1|A|U|3111
6N8N|1|A|G|3112
6N8N|1|A|A|3113
6N8N|1|A|A|3114
6N8N|1|A|C|3115
6N8N|1|A|G|3116
6N8N|1|A|C|3117
6N8N|1|A|C|3118
6N8N|1|A|U|3119
6N8N|1|A|C|3120
6N8N|1|A|U|3121
6N8N|1|A|A|3122
6N8N|1|A|A|3123
6N8N|1|A|G|3124

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain K

60S ribosomal protein L9-A

Chain b

60S ribosomal protein L16-A

Chain z

Ubiquitin-60S ribosomal protein L40