HL_6N8N_071

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUGUUG

Length

8 nucleotides

Bulged bases

6N8N|1|A|U|3354, 6N8N|1|A|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8N_071 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2466

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6N8N|1|A|C|3349
6N8N|1|A|C|3350
6N8N|1|A|U|3351
6N8N|1|A|U|3352
6N8N|1|A|G|3353
6N8N|1|A|U|3354
6N8N|1|A|U|3355
6N8N|1|A|G|3356

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains