HL_6N8N_085

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAGCUUCGGCGCCAGUGAAAUACC

Length

26 nucleotides

Bulged bases

6N8N|1|A|U|2472, 6N8N|1|A|C|2473, 6N8N|1|A|A|2484, 6N8N|1|A|A|2485, 6N8N|1|A|U|2487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8N|1|A|G|2465
6N8N|1|A|G|2466
6N8N|1|A|G|2467
6N8N|1|A|A|2468
6N8N|1|A|G|2469
6N8N|1|A|C|2470
6N8N|1|A|U|2471
6N8N|1|A|U|2472
6N8N|1|A|C|2473
6N8N|1|A|G|2474
6N8N|1|A|G|2475
6N8N|1|A|C|2476
6N8N|1|A|G|2477
6N8N|1|A|C|2478
6N8N|1|A|C|2479
6N8N|1|A|A|2480
6N8N|1|A|G|2481
6N8N|1|A|U|2482
6N8N|1|A|G|2483
6N8N|1|A|A|2484
6N8N|1|A|A|2485
6N8N|1|A|A|2486
6N8N|1|A|U|2487
6N8N|1|A|A|2488
6N8N|1|A|C|2489
6N8N|1|A|C|2490

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain S

Ribosomal Protein uL1

Chain V

60S ribosomal export protein NMD3