HL_6N8N_086

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

6N8N|1|A|C|2539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8N_086 not in the Motif Atlas

Geometric match to HL_1GID_008

Geometric discrepancy: 0.2779

The information below is about HL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50621.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6N8N|1|A|A|2535
6N8N|1|A|A|2536
6N8N|1|A|U|2537
6N8N|1|A|U|2538
6N8N|1|A|C|2539
6N8N|1|A|A|2540
6N8N|1|A|U|2541
6N8N|1|A|U|2542
6N8N|1|A|U|2543
6N8N|1|A|U|2544

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains