HL_6N8N_087

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAAGCGUUCAUAGCGACA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8N|1|A|U|2835
6N8N|1|A|C|2836
6N8N|1|A|A|2837
6N8N|1|A|A|2838
6N8N|1|A|G|2839
6N8N|1|A|C|2840
6N8N|1|A|G|2841
6N8N|1|A|U|2842
6N8N|1|A|U|2843
6N8N|1|A|C|2844
6N8N|1|A|A|2845
6N8N|1|A|U|2846
6N8N|1|A|A|2847
6N8N|1|A|G|2848
6N8N|1|A|C|2849
6N8N|1|A|G|2850
6N8N|1|A|A|2851
6N8N|1|A|C|2852
6N8N|1|A|A|2853

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain Y

Tyrosine-protein phosphatase YVH1

Chain z

Ubiquitin-60S ribosomal protein L40