HL_6N8N_091
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 6N8N|1|A|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8N_091 not in the Motif Atlas
- Homologous match to HL_8P9A_126
- Geometric discrepancy: 0.14
- The information below is about HL_8P9A_126
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
6N8N|1|A|U|640
6N8N|1|A|C|641
6N8N|1|A|U|642
6N8N|1|A|U|643
6N8N|1|A|G|644
6N8N|1|A|A|645
6N8N|1|A|A|646
6N8N|1|A|A|647
6N8N|1|A|C|648
6N8N|1|A|A|649
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain n
- 60S ribosomal protein L28
- Chain r
- 60S ribosomal protein L32
Coloring options: