HL_6N8O_066

3D structure

PDB id

6N8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N8O_066 not in the Motif Atlas

Geometric match to HL_4V9F_066

Geometric discrepancy: 0.1372

The information below is about HL_4V9F_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6N8O|1|A|C|3025
6N8O|1|A|G|3026
6N8O|1|A|A|3027
6N8O|1|A|G|3028
6N8O|1|A|A|3029
6N8O|1|A|G|3030

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain K

60S ribosomal protein L9-A

Chain Y

Tyrosine-protein phosphatase YVH1

Chain z

Ubiquitin-60S ribosomal protein L40