HL_6N9E_025

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGCCCACCAGCC

Length

12 nucleotides

Bulged bases

6N9E|1|1A|A|934, 6N9E|1|1A|C|935, 6N9E|1|1A|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9E|1|1A|G|929
6N9E|1|1A|G|930
6N9E|1|1A|C|931
6N9E|1|1A|C|932
6N9E|1|1A|C|933
6N9E|1|1A|A|934
6N9E|1|1A|C|935
6N9E|1|1A|C|936
6N9E|1|1A|A|937
6N9E|1|1A|G|938
6N9E|1|1A|C|939
6N9E|1|1A|C|940

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13