HL_6N9E_028

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6N9E|1|1A|A|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9E_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3753

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6N9E|1|1A|C|1110
6N9E|1|1A|U|1111
6N9E|1|1A|U|1112
6N9E|1|1A|A|1113
6N9E|1|1A|G|1114
6N9E|1|1A|A|1115
6N9E|1|1A|A|1116
6N9E|1|1A|G|1117
6N9E|1|1A|C|1118
6N9E|1|1A|A|1119
6N9E|1|1A|G|1120

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S Ribosomal Protein L6