HL_6N9E_165

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9E_165 not in the Motif Atlas

Geometric match to HL_5J7L_193

Geometric discrepancy: 0.1465

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6N9E|1|2A|C|2471
6N9E|1|2A|G|2472
6N9E|1|2A|U|2473
6N9E|1|2A|C|2474
6N9E|1|2A|C|2475
6N9E|1|2A|A|2476
6N9E|1|2A|C|2477
6N9E|1|2A|A|2478
6N9E|1|2A|G|2479

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S Ribosomal Protein L36

Chain 2H

50S Ribosomal Protein L6

Chain 2Q

50S Ribosomal Protein L16