HL_6N9E_181

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

6N9E|1|2a|U|202, 6N9E|1|2a|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9E_181 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.1845

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6N9E|1|2a|C|201
6N9E|1|2a|U|202
6N9E|1|2a|U|203
6N9E|1|2a|U|204
6N9E|1|2a|G|216

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains