HL_6N9E_218

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

6N9E|1|2A|A|1452, 6N9E|1|2A|U|1453, 6N9E|1|2A|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9E_218 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.286

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6N9E|1|2A|C|1450|||A
6N9E|1|2A|C|1451
6N9E|1|2A|A|1452
6N9E|1|2A|U|1453
6N9E|1|2A|G|1455
6N9E|1|2A|G|1456
6N9E|1|2A|A|1457
6N9E|1|2A|C|1458
6N9E|1|2A|G|1459
6N9E|1|2A|A|1460
6N9E|1|2A|G|1461

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S Ribosomal Protein L17