HL_6N9F_025

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

6N9F|1|1A|C|935, 6N9F|1|1A|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9F_025 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.5313

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

6N9F|1|1A|C|931
6N9F|1|1A|C|932
6N9F|1|1A|C|933
6N9F|1|1A|A|934
6N9F|1|1A|C|935
6N9F|1|1A|C|936
6N9F|1|1A|A|937
6N9F|1|1A|G|938

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13