HL_6N9F_032
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N9F_032 not in the Motif Atlas
- Homologous match to HL_4WF9_032
- Geometric discrepancy: 0.1024
- The information below is about HL_4WF9_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
6N9F|1|1A|G|1327
6N9F|1|1A|U|1328
6N9F|1|1A|G|1329
6N9F|1|1A|A|1330
6N9F|1|1A|G|1331
6N9F|1|1A|A|1332
6N9F|1|1A|A|1333
6N9F|1|1A|U|1334
6N9F|1|1A|C|1335
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1R
- 50S Ribosomal Protein L17
- Chain 1W
- 50S Ribosomal Protein L22
Coloring options: