3D structure

PDB id
6N9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
CAGCCUGGUAG
Length
11 nucleotides
Bulged bases
6N9F|1|1x|G|18, 6N9F|1|1x|G|19, 6N9F|1|1x|U|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6N9F_103 not in the Motif Atlas
Homologous match to HL_1QF6_001
Geometric discrepancy: 0.1432
The information below is about HL_1QF6_001
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_20811.4
Basepair signature
cWW-cWS-F
Number of instances in this motif group
14

Unit IDs

6N9F|1|1x|C|13
6N9F|1|1x|A|14
6N9F|1|1x|G|15
6N9F|1|1x|C|16
6N9F|1|1x|C|17
6N9F|1|1x|U|17|||A
6N9F|1|1x|G|18
6N9F|1|1x|G|19
6N9F|1|1x|U|20
6N9F|1|1x|A|21
6N9F|1|1x|G|22

Current chains

Chain 1x
P-site tRNA, Deacylated Initiator Methionyl-tRNA

Nearby chains

Chain 1A
Large subunit ribosomal RNA; LSU rRNA
Chain 1G
50S Ribosomal Protein L5

Coloring options:


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