HL_6N9F_105
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N9F_105 not in the Motif Atlas
- Homologous match to HL_6CFJ_108
- Geometric discrepancy: 0.0954
- The information below is about HL_6CFJ_108
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
6N9F|1|1x|G|53
6N9F|1|1x|5MU|54
6N9F|1|1x|PSU|55
6N9F|1|1x|C|56
6N9F|1|1x|A|57
6N9F|1|1x|A|58
6N9F|1|1x|A|59
6N9F|1|1x|U|60
6N9F|1|1x|C|61
Current chains
- Chain 1x
- P-site tRNA, Deacylated Initiator Methionyl-tRNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 50S Ribosomal Protein L5
- Chain 1Q
- 50S Ribosomal Protein L16
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