HL_6N9F_135

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGCGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9F_135 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.3184

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6N9F|1|2A|C|1041
6N9F|1|2A|G|1042
6N9F|1|2A|C|1043
6N9F|1|2A|G|1112
6N9F|1|2A|U|1113
6N9F|1|2A|G|1114

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S Ribosomal Protein L6

Chain 2Z

50S ribosomal protein L25