HL_6N9F_141

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6N9F|1|2A|U|1396, 6N9F|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9F_141 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.151

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6N9F|1|2A|G|1389
6N9F|1|2A|U|1390
6N9F|1|2A|U|1391
6N9F|1|2A|A|1392
6N9F|1|2A|A|1393
6N9F|1|2A|U|1394
6N9F|1|2A|A|1395
6N9F|1|2A|U|1396
6N9F|1|2A|U|1397
6N9F|1|2A|C|1398

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S Ribosomal Protein L23