HL_6N9F_185

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9F_185 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.11

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6N9F|1|2a|C|320
6N9F|1|2a|A|321
6N9F|1|2a|C|322
6N9F|1|2a|U|323
6N9F|1|2a|G|324
6N9F|1|2a|A|325
6N9F|1|2a|G|326
6N9F|1|2a|A|327
6N9F|1|2a|C|328
6N9F|1|2a|A|329
6N9F|1|2a|C|330
6N9F|1|2a|G|331
6N9F|1|2a|G|332
6N9F|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S Ribosomal Protein S20