HL_6N9F_217

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

6N9F|1|2A|A|1452, 6N9F|1|2A|U|1453, 6N9F|1|2A|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9F_217 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5986

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6N9F|1|2A|C|1450|||A
6N9F|1|2A|C|1451
6N9F|1|2A|A|1452
6N9F|1|2A|U|1453
6N9F|1|2A|G|1455
6N9F|1|2A|G|1456
6N9F|1|2A|A|1457
6N9F|1|2A|C|1458
6N9F|1|2A|G|1459
6N9F|1|2A|A|1460
6N9F|1|2A|G|1461

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S Ribosomal Protein L17