HL_6ND5_035

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6ND5|1|1A|U|1396, 6ND5|1|1A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND5_035 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0519

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6ND5|1|1A|G|1389
6ND5|1|1A|U|1390
6ND5|1|1A|U|1391
6ND5|1|1A|A|1392
6ND5|1|1A|A|1393
6ND5|1|1A|U|1394
6ND5|1|1A|A|1395
6ND5|1|1A|U|1396
6ND5|1|1A|U|1397
6ND5|1|1A|C|1398

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23