HL_6ND5_039
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGACACAG
- Length
- 8 nucleotides
- Bulged bases
- 6ND5|1|1A|A|1614, 6ND5|1|1A|A|1616, 6ND5|1|1A|A|1618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ND5_039 not in the Motif Atlas
- Homologous match to HL_7RQB_040
- Geometric discrepancy: 0.0558
- The information below is about HL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64430.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
6ND5|1|1A|C|1612
6ND5|1|1A|G|1613
6ND5|1|1A|A|1614
6ND5|1|1A|C|1615
6ND5|1|1A|A|1616
6ND5|1|1A|C|1617
6ND5|1|1A|A|1618
6ND5|1|1A|G|1619
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1W
- 50S ribosomal protein L22
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