HL_6ND6_190

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND6_190 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1043

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ND6|1|2a|C|320
6ND6|1|2a|A|321
6ND6|1|2a|C|322
6ND6|1|2a|U|323
6ND6|1|2a|G|324
6ND6|1|2a|A|325
6ND6|1|2a|G|326
6ND6|1|2a|A|327
6ND6|1|2a|C|328
6ND6|1|2a|A|329
6ND6|1|2a|C|330
6ND6|1|2a|G|331
6ND6|1|2a|G|332
6ND6|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20