HL_6NDK_042

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

6NDK|1|RA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_042 not in the Motif Atlas

Homologous match to HL_7A0S_007

Geometric discrepancy: 0.2373

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6NDK|1|RA|A|225
6NDK|1|RA|G|226
6NDK|1|RA|A|227
6NDK|1|RA|A|228
6NDK|1|RA|A|229
6NDK|1|RA|U|230

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RP

50S ribosomal protein L15