HL_6NDK_062

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

6NDK|1|RA|A|887, 6NDK|1|RA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_062 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.4479

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

6NDK|1|RA|C|884
6NDK|1|RA|C|885
6NDK|1|RA|C|886
6NDK|1|RA|A|887
6NDK|1|RA|C|888
6NDK|1|RA|C|889
6NDK|1|RA|A|890
6NDK|1|RA|G|892

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13