HL_6NDK_077

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6NDK|1|RA|A|1614, 6NDK|1|RA|A|1616, 6NDK|1|RA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_077 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1285

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6NDK|1|RA|C|1612
6NDK|1|RA|G|1613
6NDK|1|RA|A|1614
6NDK|1|RA|C|1615
6NDK|1|RA|A|1616
6NDK|1|RA|C|1617
6NDK|1|RA|A|1618
6NDK|1|RA|G|1619

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RW

50S ribosomal protein L22