3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
CG(PSU)AAC(5MU)A(PSU)AA(OMC)G
Length
13 nucleotides
Bulged bases
6NDK|1|RA|A|1913, 6NDK|1|RA|C|1914, 6NDK|1|RA|A|1916
QA status
Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6NDK_085 not in the Motif Atlas
Homologous match to HL_7RQB_048
Geometric discrepancy: 0.141
The information below is about HL_7RQB_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6NDK|1|RA|C|1909
6NDK|1|RA|G|1910
6NDK|1|RA|PSU|1911
6NDK|1|RA|A|1912
6NDK|1|RA|A|1913
6NDK|1|RA|C|1914
6NDK|1|RA|5MU|1915
6NDK|1|RA|A|1916
6NDK|1|RA|PSU|1917
6NDK|1|RA|A|1918
6NDK|1|RA|A|1919
6NDK|1|RA|OMC|1920
6NDK|1|RA|G|1921

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain QV
Transfer RNA; tRNA
Chain QY
A-site ASLSufA6 A37.5

Coloring options:


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